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MOLECULAR GENETICS TESTS - SPINOCEREBELLAR ATAXIA PANEL |
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Background:
The autosomal dominant cerebellar ataxias (ADCAs) encompass a clinically
and genetically heterogeneous group of disorders characterised by
progressive cerebellar ataxia and variable association of other
neurological signs. Together, the SCA1, SCA2 and SCA3/MJD trinucleotide
repeat expansions may account for 40% to more than 60% of Type I ADCA.
Type II ADCA (associated with mutations in SCA7) has retinal
degeneration as an associated finding, whereas ADCA Type III shows pure
cerebellar ataxia of later onset. Mutation frequencies depend on the
geographic and ethnic origin of the population studied. Because the SCAs
are a genetically heterogeneous group of neurodegenerative disorders,
the absence of a repeat expansion at the SCA1, SCA2 or SCA3/MJD, SCA6
and SCA7 loci does not eliminate the diagnosis of one of the other forms
of SCA. For predictive testing, therefore, it is necessary first to
document the presence of a CAG-repeat amplification in an affected
family member to confirm that molecular expansion is the underlying
mechanism of disease transmission in the family.
| SCA Type |
Chromosome Location |
CAG Repeat Sizes |
|
|
Normal |
Indeterminate |
Abnormal |
| SCA1 |
6p23 |
6 - 36 |
37 - 41* |
42 - 81 |
| SCA2 |
12q24 |
16 - 31 |
32 - 35* |
36 - 64 |
| SCA3/MJD** |
14q32.1 |
13 - 41 |
42 - 60 |
61 - 85 |
| SCA6 |
19p13 |
6 - 17 |
18 - 20 |
21 - 30 |
| SCA7 |
3p21.1 - p12 |
7 - 17 |
18 - 37 |
18 - 37 |
* The indeterminate values noted for SCA1 and SCA2 represents an
intermediate size range in which carriers can be asymptomatic, but there
may be a risk for further expansion of the repeat when transmitted to
offspring.
** Machado-Joseph disease (MJD) and SCA3 are each caused by CAG repeat
expansion in SCA3 at 14q32.1, yet the disorders can be distinguished
clinically by the presence of dystonia, rigidity and bulging eyes in MJD.
The genetic explanation for the phenotype variation has not been
determined.
The clinical features of SCA6 consist predominantly of limb and gait
dysarthria, nystagmus and mild vibratory and proprioceptive sensory
loss. Although SCA6 does not exhibit such a phenotypic variability as
MJD, genetically proven patients with SCA6 sometimes have double vision,
increase or decrease in the deep tendon reflex and divergence analysis.
SCA7 type ataxia is typically characterised by retinal degeneration.
Gonadal instability of the CAG repeats is greater than that observed in
any of the seven known neurodegenerative diseases caused by translated
CAG repeat expansions and is markedly associated with paternal
transmissions.
Analysis:
- PCR based analysis for SCA 1- 3, 6 and 7
Indications for Testing:
- Confirmation of clinical diagnosis of Spinocerebellar ataxia.
- Carrier testing for individuals who have a family history of Spinocerebellar
ataxia. (Note: Testing is also available for individual ataxias, depending on
the clinical presentation).
Speciment Requirements:
Blood: 3 x 4.0mL whole blood into EDTA tubes . Invert several times to
mix. Forward within 24-48 hours at ambient temperature.
Paediatric Samples: Minimum of 3mL whole blood in EDTA tubes.
Prenatal Samples:
- Chorionic Villus: Obtain 20mg chorionic villus sample (CVS) and
transfer to a vial containing transport medium.
- Amniotic Fluid: A minimum of 20mL amniotic fluid required. Bloody
specimens may reflect extensive contamination with maternal cells. Such a
specimen may not be suitable for testing.
NOTE:
- Maternal cell contamination is a potential problem when analysing DNA
from CVS samples or cultured amniotic cells. To rule out the presence of
maternal cell contamination a peripheral blood specimen in EDTA from the
mother must be sent with the prenatal sample (minimum 3ml whole blood in
EDTA required).
Tissue:
200 mg of tissue. Specimen must be snap frozen within one hour of
collection. Send specimen frozen on dry ice.
Paraffin blocks of tissue are also acceptable. The tissue sample should
not have had prolonged immersion in formalin before embedding.
NOTE:
- Referral reason plus adequate information and family history must be
submitted with the specimen. Pedigree must be included where appropriate.
Usual test turnaround time:
6 weeks once sample is received.
Cost of test:
SCA Panel - $985 Note: Prices excludes GST
(12.5%) and may change without notice.
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