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MOLECULAR GENETICS TESTS - FAMILIAL ADENOMATOUS POLYPOSIS
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Background:
Familial adenomatous polyposis (FAP) is an autosomal dominant condition
affecting nearly 1 in 5000 people. It is characterised by the
progressive development of hundreds to thousands of adenomatous colon
polyps, some of which inevitably progress to carcinoma if the colon is
not surgically removed. Age of onset of polyp development can be as
early as 11 or 12, and malignant transformation can occur as late as the
7th decade. As classically defined, FAP has no associated extracolonic
manifestations. However, there is at least one syndrome complex that is
allelic to FAP: Gardner syndrome. Features of Gardner syndrome include
colonic polyposis, polyps of the stomach and small intestine, globoid
osteoma especially of the mandible and calvarium, congenital hypertrophy
of the retinal pigment epithelium, epidermoid cysts and desmoid tumours.
Rarely, adrenal carcinoma, thyroid carcinoma, periampullary carcinoma
and hepatoblastoma (especially in children under age 4) can be seen in
patients with FAP/Gardner. A second condition, Turcot syndrome, may be
related to FAP. It is characterised by colonic polyposis and brain
tumours (gliomas).
The disease frequency for this documented condition is 1 in 5000 and an
estimated 2 in 5000 individuals are at 50% risk for the disorder. Thus,
there are more than 50,000 people in the United States alone who would
benefit from genetic counselling, cancer surveillance and molecular
genetic studies. Cancer surveillance for at risk individuals includes
annual colonoscopy and upper gastrointestinal endoscopy, annual
examination of the skin and annual comprehensive physical including
palpation of the thyroid. Molecular genetic studies can be useful in
some families to refine risk estimates.
With the identification and characterisation of the FAP gene (referred
to as APC) on chromosome 5, it is now possible to determine the carrier
status of individuals at risk by virtue of their family history by
employing linkage analysis. A majority of families are informative if
appropriate family members are available for study.
Analysis:
- Protein truncation tests (PTT) of exon 15.
- Exon by exon sequencing of Exons 1 to 15.
Indications for Testing:
- Pre-symptomatic testing for familial adenomatous polyposis.
Speciment Requirements:
Blood: 3 x 4.0mL whole blood into EDTA tubes . Invert several times to
mix. Forward within 24-48 hours at ambient temperature.
Paediatric Samples: Minimum of 3mL whole blood in EDTA tubes.
Prenatal Samples:
- Chorionic Villus: Obtain 20mg chorionic villus sample (CVS) and
transfer to a vial containing transport medium.
- Amniotic Fluid: A minimum of 20mL amniotic fluid required. Bloody
specimens may reflect extensive contamination with maternal cells. Such a
specimen may not be suitable for testing.
NOTE:
- Maternal cell contamination is a potential problem when analysing DNA
from CVS samples or cultured amniotic cells. To rule out the presence of
maternal cell contamination a peripheral blood specimen in EDTA from the
mother must be sent with the prenatal sample (minimum 3ml whole blood in
EDTA required).
Tissue: 200 mg of tissue. Specimen must be snap frozen within one hour of
collection. Send specimen frozen on dry ice.
Paraffin blocks of tissue are also acceptable. The tissue sample should
not have had prolonged immersion in formalin before embedding.
NOTE:
- Referral reason plus adequate information and family history must be
submitted with the specimen. Pedigree must be included where appropriate.
Usual test turnaround time:
6 weeks once sample is received.
Cost of test:
FAP - $461.03 Note: Prices excludes GST (12.5%)
and may change without notice.
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