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MOLECULAR GENETICS TESTS - FRAGILE X SYNDROME |
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Background:
Fragile X syndrome is an X-linked disorder with variable expression in
carrier males and females. Approximately 1 in 1100 males and 1 in 700
females carry the gene for this condition. Affected males typically have
a long face with prominent jaw, protruding ears, large head, large
testicles and can have joint hyperextensibility and mitral valve
prolapse. They usually have moderate to severe mental retardation,
behaviour problems including autistic behaviour, speech and language
delays. Of males who carry the gene, 20% are clinically normal. Carrier
females can show physical signs of the condition, and 35% of carriers
are mentally retarded to varying degrees although usually to a milder
degree than affected males. Many show emotional difficulties, problem
solving difficulties and learning disabilities.
While the gene responsible for the Fragile X syndrome is on the X
chromosome, it has unusual inheritance characteristics. In general,
these characteristics can be explained by the nature of the mutation
within the fragile X gene (FMR-1). The normal gene contains a three base
pair sequence (referred to as a CGG repeat) which is repeated a given
number of times on each X chromosome, typically between 5 and 50 times.
Although variable in the general population, the number of repeats is
usually inherited without change from generation to generation.
The principle mutation causing Fragile X syndrome is an amplification of
the CGG repeat sequence. Small increases in the number of these repeats
(most often in the range of 50 - 200) are called premutations and are
not typically associated with phenotypic effects in females or males
(the latter are often called "transmitting males"). Transmission of a
premutation by males to their daughters usually results in further
amplification, either to a larger premutation or to a "full mutation,"
which can be several hundred to thousands of repeats long. The full
mutation is also associated with abnormal methylation of a region
adjacent to the FMR-1 gene. This is thought to interfere with normal
FMR-1 gene expression, resulting in the Fragile X phenotype in males and
in some carrier females.
A few individuals diagnosed clinically with Fragile X syndrome do not
have the amplification-type mutation. These individuals may have a
different type of mutation within the FMR-1 gene (e.g. deletion or point
mutation) or a mutation in another gene. Although the exact frequency is
unknown, it is likely that less than 5% of affected individuals fall
into this amplification-negative category. However, because of this
possibility, the most accurate results will be obtained when an affected
individual or obligate carrier is tested to verify the type of mutation
in a family before testing at risk family members.
This molecular test, which identifies the CGG repeat amplification in
FMR-1, does not rule out other genetic causes of mental subnormality,
such as chromosome anomalies. Among patients with non-specific mental
retardation, 3.7% have full mutation of the FMR-1 gene and thus Fragile
X syndrome, and 3.6% have chromosome abnormalities other than Fragile X.
Unless there is a documented history of Fragile X syndrome in the
patient's family, both molecular and conventional cytogenetic studies
for other chromosome anomalies are indicated.
Analysis:
- PCR based analysis - for repeat size up to 100 - 120 repeats
- Southern blot analysis - for determining allele methylation status and
determining repeat sizes larger than 120 repeats.
Indications for Testing:
- Suspected diagnosis of Fragile X syndrome.
- Determination of carrier status for individuals with a family history of
Fragile X syndrome.
- Prenatal testing for Fragile X syndrome when there is a positive family
history.
- Family history of X-linked mental retardation.
CAUTIONS:
- Approximately 1-5% of cases of Fragile X syndrome do not demonstrate an
amplification-type mutation. Thus, for pre-symptomatic testing, it is
important to first document the presence of a CGG-repeat amplification in an
affected family member.
- Some overlap exists between the size of the CGG repeat region in normal
individuals and those who carry a premutation. Analysis of multiple family
members may be necessary in order to distinguish between these two
possibilities.
- Due to incomplete penetrance and variable expression of the mutation, the
test is not reliable for prenatal assessment of severity of disease.
- This test will identify Fragile X syndrome, but not other chromosome
abnormalities. Other chromosomal syndromes often have features which overlap
those of Fragile X. Routine chromosome studies are indicated in the work-up of
patients suspected of having Fragile X syndrome.
- Medical genetic consultation is available for all cases and is particularly
indicated in complex cases or in situations where the diagnosis is atypical or
uncertain.
Speciment Requirements:
Blood: 3 x 4.0mL whole blood into EDTA tubes . Invert several times to
mix. Forward within 24-48 hours at ambient temperature.
Paediatric Samples: Minimum of 3mL whole blood in EDTA tubes.
Prenatal Samples:
- Chorionic Villus: Obtain 20mg chorionic villus sample (CVS) and
transfer to a vial containing transport medium.
- Amniotic Fluid: A minimum of 20mL amniotic fluid required. Bloody
specimens may reflect extensive contamination with maternal cells. Such a
specimen may not be suitable for testing.
NOTE:
- Maternal cell contamination is a potential problem when analysing DNA
from CVS samples or cultured amniotic cells. To rule out the presence of
maternal cell contamination a peripheral blood specimen in EDTA from the
mother must be sent with the prenatal sample (minimum 3ml whole blood in
EDTA required).
Usual test turnaround time:
6 weeks once sample is received.
Cost of test:
FX - $676.11 Note: Prices excludes GST (12.5%)
and may change without notice.
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